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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27826135_27835568_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27826135 - 27835568
Intron Length:
9434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAC
U12 Branch Point Sequence:
TAACCCATATGC
Flanking Amino Acid:
HPDCFVCAVCRLPFPAGDRV
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
65.7
0.39
1.2
67.4
36.7
Major PPT
77.9
0.63
0.8
76.4
32.3
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
44.2
-0.4
2.1
55.32
42.1

Associated Gene:

Gene:
ABLIM2
Ensembl Gene ID:
ENSAPLG00000012162
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012694
27774004 - 27910844
136841
ENSAPLT00000012686
27774004 - 27910844
136841
ENSAPLT00000029585
27774004 - 27910844
136841
ENSAPLT00000021471
27774004 - 27910844
136841