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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27840224_27841720_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27840224 - 27841720
Intron Length:
1497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
GCCTATGTAAAG
Flanking Amino Acid:
GKLLNAEYISKDGIPYCETD
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
75.9
0.58
0.7
69.1
31.5
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
40.8
-0.8
2.1
41.63
43.1

Associated Gene:

Gene:
ABLIM2
Ensembl Gene ID:
ENSAPLG00000012162
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021471
27774004 - 27910844
136841
ENSAPLT00000012694
27774004 - 27910844
136841
ENSAPLT00000012686
27774004 - 27910844
136841
ENSAPLT00000029585
27774004 - 27910844
136841