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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27857431_27860726_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27857431 - 27860726
Intron Length:
3296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
ACTTACTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
AAAACTTTAAAC
Flanking Amino Acid:
FAEGEEMYLQGTSIWHPVCR
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
76.4
0.59
0.9
66.5
39.8
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
58.1
0.23
1.4
61.43
36.9

Associated Gene:

Gene:
ABLIM2
Ensembl Gene ID:
ENSAPLG00000012162
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012686
27774004 - 27910844
136841
ENSAPLT00000029585
27774004 - 27910844
136841
ENSAPLT00000021471
27774004 - 27910844
136841
ENSAPLT00000012694
27774004 - 27910844
136841