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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27864061_27868614_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27864061 - 27868614
Intron Length:
4554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTC
Flanking Amino Acid:
TSGSPSRVIYAKLGDEILDY
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
80
0.67
0.7
79.7
25.7
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
66.4
0.49
1.6
73.26
38.6

Associated Gene:

Gene:
ABLIM2
Ensembl Gene ID:
ENSAPLG00000012162
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012686
27774004 - 27910844
136841
ENSAPLT00000029585
27774004 - 27910844
136841
ENSAPLT00000012694
27774004 - 27910844
136841