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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27882260_27888662_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27882260 - 27888662
Intron Length:
6403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTAATCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAACTTTAATC
Flanking Amino Acid:
QQAPRHFHIPASRRSEGEDG
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.9
0.74
0.9
73.9
41.2
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
72.9
0.7
1.2
75.91
34.2

Associated Gene:

Gene:
ABLIM2
Ensembl Gene ID:
ENSAPLG00000012162
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012686
27774004 - 27910844
136841