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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27889501_27894583_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27889501 - 27894583
Intron Length:
5083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
ATGTCTTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATGTCTTTTATA
Flanking Amino Acid:
TQEGTTATYSRFPYSKSASL
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.3
71.8
39.7
Major BPS
79.4
0.73
1
80.1
32
Major PPT
78.4
0.64
0.8
73.2
36.7
Minor 5ss
34.8
-1.7
2.8
48.5
40.3
Minor BPS
61.3
0.35
1.6
68.96
38.3

Associated Gene:

Gene:
ABLIM2
Ensembl Gene ID:
ENSAPLG00000012162
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012686
27774004 - 27910844
136841
ENSAPLT00000029585
27774004 - 27910844
136841
ENSAPLT00000021471
27774004 - 27910844
136841
ENSAPLT00000012694
27774004 - 27910844
136841