Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27896920_27898275_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27896920 - 27898275

Intron Length:

1356

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATATTGC

5'SS Class:

major

3'SS Sequence:

CATTCTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

AAATTCTAAACT

Flanking Amino Acid:

TDQEASWGMKEYKVRRAFPT

Intron Amino Acid Position:

629

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

68.2

37.8

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

83.1

0.74

0.8

77.1

31.2

Minor 5ss

-0.4

2.6

61.6

43.3

Minor BPS

63.5

0.5

1.6

76.2

40.1

Associated Gene:

Gene:

ABLIM2

Ensembl Gene ID:

ENSAPLG00000012162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029585

27774004 - 27910844

136841

ENSAPLT00000021471

27774004 - 27910844

136841

ENSAPLT00000012694

27774004 - 27910844

136841

ENSAPLT00000012686

27774004 - 27910844

136841