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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27898599_27910730_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27898599 - 27910730
Intron Length:
12132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTATTTTCATT
Flanking Amino Acid:
PKDVDRTRLERHLSPEEFQE
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
100
1.24
0.5
100
0
Major PPT
76.9
0.61
1
75.4
38.3
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
52.5
0.16
1.7
72.43
39.2

Associated Gene:

Gene:
ABLIM2
Ensembl Gene ID:
ENSAPLG00000012162
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012686
27774004 - 27910844
136841
ENSAPLT00000029585
27774004 - 27910844
136841
ENSAPLT00000021471
27774004 - 27910844
136841
ENSAPLT00000012694
27774004 - 27910844
136841