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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2798943_2805623_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2798943 - 2805623
Intron Length:
6681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CACCTCTAAAAT
Flanking Amino Acid:
ADEEEIEEYKDEVELQQDEE
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
76.9
33.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
83.7
0.76
0.8
76.2
37.8
Minor 5ss
31.3
-2.1
3
38.6
46.4
Minor BPS
47.1
-0.1
1.8
59.08
44

Associated Gene:

Gene:
METTL14
Ensembl Gene ID:
ENSAPLG00000002025
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026091
2796358 - 2821128
24771
ENSAPLT00000025782
2796358 - 2821128
24771
ENSAPLT00000002153
2786327 - 2821652
35326