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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_27991726_27995664_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27991726 - 27995664
Intron Length:
3939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
CCTTTTCTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTTTCTTAAAG
Flanking Amino Acid:
PGKAPEYITSNYDSDAMSSS
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71.9
39.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.1
0.61
1
77.9
28.3
Minor 5ss
34.2
-1.8
2.9
48
41.7
Minor BPS
71
0.52
1.5
72.05
40.8

Associated Gene:

Gene:
AFAP1
Ensembl Gene ID:
ENSAPLG00000012327
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028518
27974536 - 28035827
61292
ENSAPLT00000020888
27974536 - 28033131
58596
ENSAPLT00000012905
27974536 - 28035719
61184
ENSAPLT00000045571
27974536 - 28036137
61602
ENSAPLT00000042735
27974536 - 28033041
58506