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Intron Name: Anas_platyrhynchos_platyrhynchos_4_27995877_27998820_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27995877 - 27998820

Intron Length:

2944

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAATTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTGCATTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

TGAGATTTAACT

Flanking Amino Acid:

LCVIKENKLLCYKSSKDQQP

Intron Amino Acid Position:

183

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

82.5

30.8

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

82.3

0.73

0.9

76.8

Minor 5ss

46.3

-0.4

2.8

64.2

42.3

Minor BPS

60.5

0.41

1.6

74.57

41.9

Associated Gene:

Gene:

AFAP1

Ensembl Gene ID:

ENSAPLG00000012327

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028518

27974536 - 28035827

61292

ENSAPLT00000020888

27974536 - 28033131

58596

ENSAPLT00000012905

27974536 - 28035719

61184

ENSAPLT00000045571

27974536 - 28036137

61602

ENSAPLT00000042735

27974536 - 28033041

58506