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Intron Name: Anas_platyrhynchos_platyrhynchos_4_27999001_28009839_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

27999001 - 28009839

Intron Length:

10839

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGGT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCTCCTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TTGTATTTGATA

Flanking Amino Acid:

SKEQAEQWLKVIKDVCSNCT

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

78.9

35.3

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

71.6

0.49

32.9

Minor 5ss

32.2

-2

3.5

47.6

47.9

Minor BPS

61.4

0.35

1.5

70.55

Associated Gene:

Gene:

AFAP1

Ensembl Gene ID:

ENSAPLG00000012327

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028518

27974536 - 28035827

61292

ENSAPLT00000020888

27974536 - 28033131

58596

ENSAPLT00000012905

27974536 - 28035719

61184

ENSAPLT00000045571

27974536 - 28036137

61602

ENSAPLT00000042735

27974536 - 28033041

58506