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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28009933_28010905_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28009933 - 28010905
Intron Length:
973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
GTGACATTATAT
Flanking Amino Acid:
SPVHKTELEKKLSSERPSSD
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
87
0.83
0.7
81.4
30.6
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
46.5
-0.1
2
64.46
45

Associated Gene:

Gene:
AFAP1
Ensembl Gene ID:
ENSAPLG00000012327
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042735
27974536 - 28033041
58506
ENSAPLT00000028518
27974536 - 28035827
61292
ENSAPLT00000020888
27974536 - 28033131
58596
ENSAPLT00000012905
27974536 - 28035719
61184
ENSAPLT00000045571
27974536 - 28036137
61602