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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28015014_28018242_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28015014 - 28018242
Intron Length:
3229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
CATTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATTTCATT
Flanking Amino Acid:
SSAEEDVPTCGYLNVLSNNR
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
36.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.5
0.69
0.9
74.2
34.8
Minor 5ss
33.1
-1.9
3.5
45
45.5
Minor BPS
53.6
0.19
1.9
78.07
38.6

Associated Gene:

Gene:
AFAP1
Ensembl Gene ID:
ENSAPLG00000012327
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042735
27974536 - 28033041
58506
ENSAPLT00000028518
27974536 - 28035827
61292
ENSAPLT00000020888
27974536 - 28033131
58596
ENSAPLT00000012905
27974536 - 28035719
61184
ENSAPLT00000045571
27974536 - 28036137
61602