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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28018455_28020265_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28018455 - 28020265
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCCGTGG
5'SS Class:
major
3'SS Sequence:
CCTCTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
AAGACCTTATGT
Flanking Amino Acid:
RNGQEVAVLEASSSEDMGRW
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.2
48.5
44.5
Major BPS
70
0.5
1
59.6
38.6
Major PPT
82.5
0.73
0.7
76.4
25.6
Minor 5ss
35.2
-1.7
3.4
46.9
48.5
Minor BPS
48.8
-0
1.9
64.37
45.6

Associated Gene:

Gene:
AFAP1
Ensembl Gene ID:
ENSAPLG00000012327
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020888
27974536 - 28033131
58596
ENSAPLT00000012905
27974536 - 28035719
61184
ENSAPLT00000045571
27974536 - 28036137
61602
ENSAPLT00000042735
27974536 - 28033041
58506
ENSAPLT00000028518
27974536 - 28035827
61292