About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28027577_28029383_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28027577 - 28029383
Intron Length:
1807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTAATATGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGCCATTTAATA
Flanking Amino Acid:
SVSCVKRTASNAEQYKYGKN
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
81.2
32.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.8
0.49
1.1
65.6
44.3
Minor 5ss
41.5
-0.9
2.8
57
41.2
Minor BPS
55.8
0.18
1.5
62.34
38

Associated Gene:

Gene:
AFAP1
Ensembl Gene ID:
ENSAPLG00000012327
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028518
27974536 - 28035827
61292
ENSAPLT00000020888
27974536 - 28033131
58596
ENSAPLT00000012905
27974536 - 28035719
61184
ENSAPLT00000045571
27974536 - 28036137
61602
ENSAPLT00000042735
27974536 - 28033041
58506