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Intron Name: Anas_platyrhynchos_platyrhynchos_4_28029549_28030139_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

28029549 - 28030139

Intron Length:

591

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATGAGGT

5'SS Class:

major

3'SS Sequence:

CTGTGGATGACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATAACAT

U12 Branch Point Sequence:

GTTGGCATAACA

Flanking Amino Acid:

DLRAAIEVNAGRKTQVILED

Intron Amino Acid Position:

690

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.59

64.3

Major BPS

62.2

0.3

1.1

69.4

35.8

Major PPT

59.9

0.22

1.1

53.7

44.8

Minor 5ss

38.4

-1.3

3.4

52.9

46.1

Minor BPS

50.3

0.01

2.1

69.03

43.1

Associated Gene:

Gene:

AFAP1

Ensembl Gene ID:

ENSAPLG00000012327

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042735

27974536 - 28033041

58506

ENSAPLT00000028518

27974536 - 28035827

61292

ENSAPLT00000020888

27974536 - 28033131

58596

ENSAPLT00000012905

27974536 - 28035719

61184

ENSAPLT00000045571

27974536 - 28036137

61602