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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28030331_28031008_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28030331 - 28031008
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAA
5'SS Class:
strong_major
3'SS Sequence:
CACTCTTTATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCACTCTTTATT
Flanking Amino Acid:
EPKSGTSSPQSPIFKHRTLE
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.9
34.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.4
0.46
0.9
70.1
34.7
Minor 5ss
49.2
-0
2.5
63.9
47.7
Minor BPS
55.1
0.24
1.6
69.45
41.5

Associated Gene:

Gene:
AFAP1
Ensembl Gene ID:
ENSAPLG00000012327
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042735
27974536 - 28033041
58506
ENSAPLT00000028518
27974536 - 28035827
61292
ENSAPLT00000020888
27974536 - 28033131
58596
ENSAPLT00000012905
27974536 - 28035719
61184
ENSAPLT00000045571
27974536 - 28036137
61602