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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28031171_28032924_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28031171 - 28032924
Intron Length:
1754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTGAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTTTGCTGAATT
Flanking Amino Acid:
CRGHVLRKAKTVQPKLCSAH
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
63.9
0.31
1
63.9
41.9
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
68.3
0.65
1.9
88.83
36.2

Associated Gene:

Gene:
AFAP1
Ensembl Gene ID:
ENSAPLG00000012327
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045571
27974536 - 28036137
61602
ENSAPLT00000042735
27974536 - 28033041
58506
ENSAPLT00000028518
27974536 - 28035827
61292