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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28031171_28033080_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28031171 - 28033080
Intron Length:
1910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGGCCTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TGGCTCTCAATT
Flanking Amino Acid:
CRGHVLRKAKL*
Intron Amino Acid Position:
722

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
78.6
0.64
0.9
72.7
37.5
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
56.5
0.28
1.5
70.17
40.9

Associated Gene:

Gene:
AFAP1
Ensembl Gene ID:
ENSAPLG00000012327
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020888
27974536 - 28033131
58596