About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28032988_28033080_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28032988 - 28033080
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGGCCTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TGGCTCTCAATT
Flanking Amino Acid:
QGAAAKSCHQL*
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.9
36.9
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
78.6
0.64
0.9
72.7
37.5
Minor 5ss
50.2
0.01
2.5
68.8
42.2
Minor BPS
56.5
0.28
1.5
70.17
40.9

Associated Gene:

Gene:
AFAP1
Ensembl Gene ID:
ENSAPLG00000012327
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045571
27974536 - 28036137
61602