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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28032988_28035692_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28032988 - 28035692
Intron Length:
2705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATTTCTCTAACA
Flanking Amino Acid:
QGAAAKSCHQEWEMKNGT*
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.9
36.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
81.9
0.72
0.7
73.1
31.7
Minor 5ss
50.2
0.01
2.5
68.8
42.2
Minor BPS
71.9
0.69
1.6
82.62
31.5

Associated Gene:

Gene:
AFAP1
Ensembl Gene ID:
ENSAPLG00000012327
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028518
27974536 - 28035827
61292