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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28033132_28035692_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
28033132 - 28035692
Intron Length:
2561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTCCCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATTTCTCTAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
81.3
32.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
81.9
0.72
0.7
73.1
31.7
Minor 5ss
36.2
-1.6
2.8
45
36
Minor BPS
71.9
0.69
1.6
82.62
31.5

Associated Gene:

Gene:
AFAP1
Ensembl Gene ID:
ENSAPLG00000012327
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045571
27974536 - 28036137
61602