Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28054325_28054655_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28054325 - 28054655

Intron Length:

331

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTGGC

5'SS Class:

major

3'SS Sequence:

TGTATTTTCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAT

U12 Branch Point Sequence:

GTTTCTGTATTT

Flanking Amino Acid:

LLMPVSVQSQAITQAWF*

Intron Amino Acid Position:

1033

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

1.3

72.7

38.2

Major BPS

74.4

0.61

0.9

73.6

28.6

Major PPT

77.2

0.61

0.8

72.5

37.6

Minor 5ss

28.4

-2.5

35.8

40.9

Minor BPS

50.6

0.1

2.2

76.04

41.4

Associated Gene:

Gene:

SORCS2

Ensembl Gene ID:

ENSAPLG00000012740

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026890

28054301 - 28282666

228366

ENSAPLT00000020281

28054301 - 28537677

483377