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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28057123_28064945_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28057123 - 28064945
Intron Length:
7823

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAA
U12 Branch Point Sequence:
ACTTCCATCACA
Flanking Amino Acid:
VGAFILYKFKRKLPGRNVYA
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
84.1
34
Major BPS
59.7
0.24
1
67
29.8
Major PPT
69.9
0.45
0.9
68.1
37.7
Minor 5ss
24.7
-2.9
3.6
32.7
42.2
Minor BPS
56
0.18
2.1
70.63
41.5

Associated Gene:

Gene:
SORCS2
Ensembl Gene ID:
ENSAPLG00000012740
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013282
28054260 - 28504871
450612
ENSAPLT00000042740
28056129 - 28537677
481549
ENSAPLT00000026890
28054301 - 28282666
228366
ENSAPLT00000025750
28054260 - 28537677
483418
ENSAPLT00000020281
28054301 - 28537677
483377