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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28071713_28073328_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28071713 - 28073328
Intron Length:
1616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTCTTT
5'SS Class:
major
3'SS Sequence:
TTTGTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TGTTCTATAATT
Flanking Amino Acid:
GRVVTGLLAKETNIPEETLM
Intron Amino Acid Position:
853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.1
67.9
39.8
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
43.3
-0.7
3.3
64.7
46.6
Minor BPS
70
0.71
1.5
85.65
34.4

Associated Gene:

Gene:
SORCS2
Ensembl Gene ID:
ENSAPLG00000012740
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013282
28054260 - 28504871
450612
ENSAPLT00000042740
28056129 - 28537677
481549
ENSAPLT00000026890
28054301 - 28282666
228366
ENSAPLT00000025750
28054260 - 28537677
483418
ENSAPLT00000020281
28054301 - 28537677
483377