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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28075528_28076899_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28075528 - 28076899
Intron Length:
1372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGAA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTTAAAG
Flanking Amino Acid:
FYWWIGNNLQPLLTLDNFLV
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.1
34.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80.8
0.69
1
82.2
33.3
Minor 5ss
30.3
-2.3
3.4
40
46.1
Minor BPS
65.9
0.36
1.4
67.73
40.3

Associated Gene:

Gene:
SORCS2
Ensembl Gene ID:
ENSAPLG00000012740
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025750
28054260 - 28537677
483418
ENSAPLT00000020281
28054301 - 28537677
483377
ENSAPLT00000013282
28054260 - 28504871
450612
ENSAPLT00000042740
28056129 - 28537677
481549
ENSAPLT00000026890
28054301 - 28282666
228366