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Intron Name: Anas_platyrhynchos_platyrhynchos_4_28077034_28081951_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28077034 - 28081951

Intron Length:

4918

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTAAGTTAC

5'SS Class:

major

3'SS Sequence:

GAACTTTGTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GTTTTGGGAACT

Flanking Amino Acid:

DEAVVFIQVNPPLQALNLEV

Intron Amino Acid Position:

729

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.5

0.48

1.3

69.7

37.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

68.6

0.42

1.1

65.6

44.9

Minor 5ss

42.4

-0.8

2.8

57.1

40.8

Minor BPS

44.8

-0.3

2.6

72.98

43.9

Associated Gene:

Gene:

SORCS2

Ensembl Gene ID:

ENSAPLG00000012740

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013282

28054260 - 28504871

450612

ENSAPLT00000042740

28056129 - 28537677

481549

ENSAPLT00000026890

28054301 - 28282666

228366

ENSAPLT00000025750

28054260 - 28537677

483418

ENSAPLT00000020281

28054301 - 28537677

483377