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Intron Name: Anas_platyrhynchos_platyrhynchos_4_28082139_28085637_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28082139 - 28085637

Intron Length:

3499

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTAATG

5'SS Class:

major

3'SS Sequence:

ATTCTCCTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATATTTTTATAT

Flanking Amino Acid:

DITFIVRQEQGDILNTKYQV

Intron Amino Acid Position:

667

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

68.3

42.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

80.8

0.69

0.7

78.5

29.6

Minor 5ss

35.8

-1.6

3.3

48.6

47.2

Minor BPS

54.9

0.23

1.6

71.96

38.9

Associated Gene:

Gene:

SORCS2

Ensembl Gene ID:

ENSAPLG00000012740

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026890

28054301 - 28282666

228366

ENSAPLT00000025750

28054260 - 28537677

483418

ENSAPLT00000020281

28054301 - 28537677

483377

ENSAPLT00000013282

28054260 - 28504871

450612

ENSAPLT00000042740

28056129 - 28537677

481549