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Intron Name: Anas_platyrhynchos_platyrhynchos_4_28088028_28088624_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28088028 - 28088624

Intron Length:

597

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TGATGTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

TTGGTGTTGATG

Flanking Amino Acid:

VCECTSSDFLCDYGFERSAP

Intron Amino Acid Position:

566

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

70.5

41.3

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

80.2

0.68

0.9

77.1

41.8

Minor 5ss

32.5

-2

38.1

40.9

Minor BPS

45.3

-0.5

2.2

52.73

43.3

Associated Gene:

Gene:

SORCS2

Ensembl Gene ID:

ENSAPLG00000012740

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025750

28054260 - 28537677

483418

ENSAPLT00000020281

28054301 - 28537677

483377

ENSAPLT00000013282

28054260 - 28504871

450612

ENSAPLT00000042740

28056129 - 28537677

481549

ENSAPLT00000026890

28054301 - 28282666

228366