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Intron Name: Anas_platyrhynchos_platyrhynchos_4_28104468_28111507_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28104468 - 28111507

Intron Length:

7040

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAAC

5'SS Class:

strong_major

3'SS Sequence:

ATCTGACTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTATCT

Flanking Amino Acid:

TSDCGNTWRQVFEEEHHILY

Intron Amino Acid Position:

415

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

75.1

35.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

70.1

0.45

0.9

63.2

37.9

Minor 5ss

32.4

-2

3.2

42.3

44.8

Minor BPS

74.5

0.85

1.5

91.05

32.7

Associated Gene:

Gene:

SORCS2

Ensembl Gene ID:

ENSAPLG00000012740

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013282

28054260 - 28504871

450612

ENSAPLT00000042740

28056129 - 28537677

481549

ENSAPLT00000026890

28054301 - 28282666

228366

ENSAPLT00000025750

28054260 - 28537677

483418

ENSAPLT00000020281

28054301 - 28537677

483377