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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28111585_28121743_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28111585 - 28121743
Intron Length:
10159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTGTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCCTTTGTGACA
Flanking Amino Acid:
DTAPGLIMGAGNLGSQLVEY
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
83.9
27.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
74.3
0.55
1
71.1
38.6
Minor 5ss
35.6
-1.6
3.4
49
47.2
Minor BPS
48.3
-0.1
2
60.52
40.5

Associated Gene:

Gene:
SORCS2
Ensembl Gene ID:
ENSAPLG00000012740
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026890
28054301 - 28282666
228366
ENSAPLT00000025750
28054260 - 28537677
483418
ENSAPLT00000020281
28054301 - 28537677
483377
ENSAPLT00000013282
28054260 - 28504871
450612
ENSAPLT00000042740
28056129 - 28537677
481549