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Intron Name: Anas_platyrhynchos_platyrhynchos_4_28144385_28146532_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28144385 - 28146532

Intron Length:

2148

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTCCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

CCTGTCATATGT

Flanking Amino Acid:

VHMEIQDPSGGYRYITCQMQ

Intron Amino Acid Position:

176

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

75.9

35.2

Major BPS

72.5

0.56

1.2

39.9

Major PPT

82.5

0.73

0.7

80.9

24.4

Minor 5ss

44.8

-0.6

2.6

56.7

47.6

Minor BPS

40.9

-0.6

2.1

55.25

47.1

Associated Gene:

Gene:

SORCS2

Ensembl Gene ID:

ENSAPLG00000012740

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025750

28054260 - 28537677

483418

ENSAPLT00000020281

28054301 - 28537677

483377

ENSAPLT00000013282

28054260 - 28504871

450612

ENSAPLT00000042740

28056129 - 28537677

481549

ENSAPLT00000026890

28054301 - 28282666

228366