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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28155746_28160225_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28155746 - 28160225
Intron Length:
4480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCTAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
KVLAYTKEGKVYASIDLGKK
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
61
0.27
1.3
58.7
39.9
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
SORCS2
Ensembl Gene ID:
ENSAPLG00000012740
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025750
28054260 - 28537677
483418
ENSAPLT00000020281
28054301 - 28537677
483377
ENSAPLT00000013282
28054260 - 28504871
450612
ENSAPLT00000042740
28056129 - 28537677
481549
ENSAPLT00000026890
28054301 - 28282666
228366