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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28160391_28282448_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28160391 - 28282448
Intron Length:
122058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGTTGTCATTT
Flanking Amino Acid:
FYICPTNKKKIILVSSSHND
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
86.8
0.83
0.7
85.5
29.2
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
44.3
-0.3
2.3
67.09
44.5

Associated Gene:

Gene:
SORCS2
Ensembl Gene ID:
ENSAPLG00000012740
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025750
28054260 - 28537677
483418
ENSAPLT00000020281
28054301 - 28537677
483377
ENSAPLT00000013282
28054260 - 28504871
450612
ENSAPLT00000042740
28056129 - 28537677
481549
ENSAPLT00000026890
28054301 - 28282666
228366