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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2817066_2820235_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2817066 - 2820235
Intron Length:
3170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGTG
5'SS Class:
major
3'SS Sequence:
TTCTATTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
TCTTCTTCTATT
Flanking Amino Acid:
LFGRDSTIRPGWLTVGPTLT
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
67.3
44.3
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
78.1
0.63
0.7
77.4
31
Minor 5ss
40.8
-1
3.4
57.9
46.7
Minor BPS
55.4
0.25
1.9
75.66
41.6

Associated Gene:

Gene:
METTL14
Ensembl Gene ID:
ENSAPLG00000002025
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002153
2786327 - 2821652
35326
ENSAPLT00000026091
2796358 - 2821128
24771
ENSAPLT00000025782
2796358 - 2821128
24771