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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28282549_28282664_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
28282549 - 28282664
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TGATTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
AGGTGTTTGATT
Flanking Amino Acid:
MSSDFGTLYT
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
82.6
30.5
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
83.9
0.76
0.8
81.4
36
Minor 5ss
66.3
0.55
2.2
79.9
33.6
Minor BPS
49.9
0.07
1.8
65.08
40.3

Associated Gene:

Gene:
SORCS2
Ensembl Gene ID:
ENSAPLG00000012740
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026890
28054301 - 28282666
228366