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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2829869_2830379_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2829869 - 2830379
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
TCACTTCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAC
U12 Branch Point Sequence:
TCACTTCTAACA
Flanking Amino Acid:
PSFAHISTEATLLPDLDNPY
Intron Amino Acid Position:
960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
69.1
0.48
1
70
32.1
Major PPT
73.8
0.54
0.9
69.5
35.3
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
51
0.03
1.6
61.78
38.3

Associated Gene:

Gene:
SEC24D
Ensembl Gene ID:
ENSAPLG00000002436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002494
2828184 - 2880942
52759