Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2830572_2831098_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2830572 - 2831098

Intron Length:

527

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGTGTG

5'SS Class:

major

3'SS Sequence:

TTTTGTCCCACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

AGGTTTGCAACT

Flanking Amino Acid:

LFFYPQLLPIHSLDLKSDAV

Intron Amino Acid Position:

896

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

70.9

39.3

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

82.4

0.73

0.8

76.9

Minor 5ss

38.9

-1.3

3.4

55.1

43.4

Minor BPS

45.2

-0.2

2.1

62.49

Associated Gene:

Gene:

SEC24D

Ensembl Gene ID:

ENSAPLG00000002436

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002494

2828184 - 2880942

52759