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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2831279_2832535_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2831279 - 2832535
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CCCTGCCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
ATACACTAAACA
Flanking Amino Acid:
NCASPSAVSQLILPDAMKVL
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
78.6
37.3
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
69.1
0.43
0.8
65
30.7
Minor 5ss
30.4
-2.2
3.2
38.7
46.6
Minor BPS
52.3
0.07
1.9
65.63
40

Associated Gene:

Gene:
SEC24D
Ensembl Gene ID:
ENSAPLG00000002436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002494
2828184 - 2880942
52759