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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2832655_2833077_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2832655 - 2833077
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CTGTTATTAACA
Flanking Amino Acid:
DALINFFAKSAFKAILSQPL
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
78.9
0.65
0.8
73.7
35.8
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
64.6
0.45
1.6
71.79
40.5

Associated Gene:

Gene:
SEC24D
Ensembl Gene ID:
ENSAPLG00000002436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002494
2828184 - 2880942
52759