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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2835557_2836327_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2835557 - 2836327
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTACACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TTGTGCTTTACA
Flanking Amino Acid:
GTLYKYNNFQLSSDSPQFLT
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
72.8
0.57
1
81
30.3
Major PPT
82
0.72
0.8
78.4
34.9
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
60.1
0.31
2.1
75.18
42.3

Associated Gene:

Gene:
SEC24D
Ensembl Gene ID:
ENSAPLG00000002436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002494
2828184 - 2880942
52759