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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2837088_2839175_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2837088 - 2839175
Intron Length:
2088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTACAATG
5'SS Class:
major
3'SS Sequence:
GTCTTTGCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GTCTTTGCAACA
Flanking Amino Acid:
VIQAGMEALKAAECAGKLFI
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.3
67.6
43.5
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
70.4
0.46
1
65.6
39.9
Minor 5ss
39
-1.2
2.9
49.8
46.1
Minor BPS
46
-0.3
2.1
59.24
41.1

Associated Gene:

Gene:
SEC24D
Ensembl Gene ID:
ENSAPLG00000002436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002494
2828184 - 2880942
52759