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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2839270_2839897_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2839270 - 2839897
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAAGTAC
5'SS Class:
major
3'SS Sequence:
TCTTCTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TCTTCTTTCATA
Flanking Amino Acid:
DFQESRSVVNNLLDQIPEMF
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
66.2
34
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
83.2
0.75
0.7
79.6
25.9
Minor 5ss
38.1
-1.3
3.4
49.4
41.7
Minor BPS
65
0.46
1.7
74.34
38.4

Associated Gene:

Gene:
SEC24D
Ensembl Gene ID:
ENSAPLG00000002436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002494
2828184 - 2880942
52759