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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_2844176_2846972_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2844176 - 2846972
Intron Length:
2797

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
ATTTTTTCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TTCTCTGTGAAT
Flanking Amino Acid:
EYVATLDYCRNNKPPNPPAY
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
81.2
0.7
0.7
77.3
30.8
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
50.8
0.1
2.2
75.61
41.6

Associated Gene:

Gene:
SEC24D
Ensembl Gene ID:
ENSAPLG00000002436
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002494
2828184 - 2880942
52759