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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28669459_28671041_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28669459 - 28671041
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TCTTCTCTAACT
Flanking Amino Acid:
RLEEQLKEVTDKYKRALADA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
60.6
38.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
93.8
0.98
0.5
92.8
16.7
Minor 5ss
30.4
-2.2
3.1
40.5
38.7
Minor BPS
72.8
0.79
1.6
88.42
36.8

Associated Gene:

Gene:
GRPEL1
Ensembl Gene ID:
ENSAPLG00000023287
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021939
28668974 - 28674183
5210