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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28671124_28673407_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28671124 - 28673407
Intron Length:
2284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGTGAA
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
CCAGACTAATCC
Flanking Amino Acid:
QKLVEEAKLYGIQSFCKDLL
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
68.9
38
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
86.4
0.82
0.7
85.4
29.4
Minor 5ss
27.9
-2.5
3
32.7
42
Minor BPS
39.9
-0.7
2
43.29
44.2

Associated Gene:

Gene:
GRPEL1
Ensembl Gene ID:
ENSAPLG00000023287
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021939
28668974 - 28674183
5210