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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28683136_28683371_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28683136 - 28683371
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CATTCTTTCATT
Flanking Amino Acid:
EQVKERAVREVRVENVKVKL
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.2
0.59
0.8
66.3
35.8
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
61.7
0.45
1.7
76.34
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000631
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000603
28682053 - 28683917
1865