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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28690256_28693266_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
28690256 - 28693266
Intron Length:
3011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGG
5'SS Class:
major
3'SS Sequence:
CTGAAATGTCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATTCCCTGAAAT
Flanking Amino Acid:
MQSRNKKWAQILAALQKDNR
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.7
44.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
57
0.16
1.1
47.4
44.7
Minor 5ss
31
-2.2
3.2
39.7
45.9
Minor BPS
66.8
0.6
1.5
82.98
36.9

Associated Gene:

Gene:
TBC1D14
Ensembl Gene ID:
ENSAPLG00000013358
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013942
28690190 - 28732086
41897