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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_28701469_28704482_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28701469 - 28704482
Intron Length:
3014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
GTTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATAGAGCTAACT
Flanking Amino Acid:
MAFFRVDHGLMLTYFAAFEV
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
86
0.81
0.8
80.6
37
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
42.7
-0.4
2.4
65.13
44.7

Associated Gene:

Gene:
TBC1D14
Ensembl Gene ID:
ENSAPLG00000013358
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013942
28690190 - 28732086
41897